sounds like you need to start again check the crack and polish or get a new one if its damaged make sure the block is ok then if you want honda bearings measure everything and get the correct bearings to keep the correct clearance.
Honda said measuring wont help, if theres no damage to the crank (which there isnt) then all you need is the correct colour code which determines measurments. Can you please tell me what crack and polish is? First time ive heard of this.